External Resources

1. Free Courses

   • HIGHLY RECOMMENDED - The Missing Semester of Your CS Education from MIT
   • HIGHLY RECOMMENDED - The Unix Shell from Software Carpentry
   • Programming with Python
   • Programming with R

2. User Guides

   • HIGHLY RECOMMENDED - General Linux Cheat Sheet from Geeks for Geeks (some may not be supported on Hyak)
   • Apptainer User Guide
   • Conda Documentation
   • Jupyter Documentation
   • Advanced Bash Guide

3. Containers Reading

   • What is a Container? from Docker
   • Containerization (computing) from Wikipedia
   • What are Containers? from Google Cloud
   • Understanding Containers from RedHat

4. Containers Videos

   • HIGHLY RECOMMENDED - Apptainer: Deep Dive, Use Cases, and Examples from CiQ
   • you need to learn Docker RIGHT NOW!! // Docker Containers 101 from NetworkChuck
   • Containerization Explained from IBM Technologies
   • Containers for Absolute Beginners from Tiny Technical Tutorials

5. Sources for pre-built Containers

   • HIGHLY RECOMMENDED - DockerHub
   • HIGHLY RECOMMENDED - NVIDIA Containers Catalog and For NVIDIA Containers for AI specifically
   • BioContainers
   • Google: "your-software-name Dockerfile"
   • Small but growing collection here: Hyak Team apptainer-images repo

6. BASH Videos

   • you need to learn BASH Scripting RIGHT NOW!! // EP 1 from NetworkChuck
   • BASH scripting will change your life from NetworkChuck
   • this BASH script will make you a MILLIONAIRE from NetworkChuck